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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs4660306 1 rs6667191 chr1:45982844 CCDC163P chr1:45960581-45965646:- -0.76 -8.48 1.44E-11 Homocysteine levels
UVM cis rs13014235 1 rs6714736 chr2:202214148 ALS2CR12 chr2:202153148-202222101:- 0.47 4.93 7.82E-6 Basal cell carcinoma
UVM cis rs13014235 1 rs6737085 chr2:202221441 ALS2CR12 chr2:202153148-202222101:- -0.46 -4.69 1.82E-5 Basal cell carcinoma
UVM cis rs10935120 1 rs6763088 chr3:134254989 ANAPC13 chr3:134196547-134204865:- -0.46 -6.87 6.1E-9 Height
UVM cis rs10935120 1 rs6763093 chr3:134254995 ANAPC13 chr3:134196547-134204865:- -0.47 -6.73 1.05E-8 Height
UVM cis rs10935120 1 rs6765505 chr3:134208132 ANAPC13 chr3:134196547-134204865:- 0.47 7.01 3.68E-9 Height
UVM cis rs10935120 1 rs6766818 chr3:134226159 ANAPC13 chr3:134196547-134204865:- 0.46 7.06 3.0E-9 Height
UVM cis rs10935120 1 rs6766897 chr3:134191303 ANAPC13 chr3:134196547-134204865:- 0.44 6.32 4.95E-8 Height
UVM cis rs10935120 1 rs6769885 chr3:134286913 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs9876781 1 rs6770470 chr3:48435123 TREX1 chr3:48501186-48509043:+ -0.38 -4.8 1.26E-5 Longevity
UVM cis rs10935120 1 rs6772896 chr3:134203347 ANAPC13 chr3:134196547-134204865:- 0.47 7.01 3.68E-9 Height
UVM cis rs10935120 1 rs6782563 chr3:134295959 ANAPC13 chr3:134196547-134204865:- -0.45 -6.73 1.03E-8 Height
UVM cis rs9876781 1 rs6784322 chr3:48422235 TREX1 chr3:48501186-48509043:+ -0.41 -4.74 1.53E-5 Longevity
UVM cis rs10935120 1 rs6785027 chr3:134211649 ANAPC13 chr3:134196547-134204865:- -0.46 -6.87 6.1E-9 Height
UVM cis rs10935120 1 rs6787371 chr3:134254991 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height